26cacb7b31da174761a30c61f5dc5a289655f66cda5998dcb1d8b030c16f08cd  .gitignore
83fe9ca3cd66a0ca7f6083152cdd4636e4a0927feff6e7804b3469a9eb2e0626  ADVERSARIAL_REVIEW_DISPOSITION.md
cd0bc420d82235796fa8f7cce0426906a08de9d2d4cd0a5357ff1d712b07460b  CERTIFICATE_FIELD_COVERAGE.md
5a152b94e21cfe2f842b653467fbd5dea6562f62a14ba91e5dd48ccd0ad09838  CHANGELOG.md
a49c2213d0545f273a99e53a206ed2082d198dbf4f9ede9748377f18405a477e  CITATION.cff
0f16c3c6989a92711704f27a725108051283efc0b3dd3aff544594f8bf8f6579  LICENSE-CODE
99dad05bcf0cfdda51e31d6a4496ef60f32eb8c9a99ddfad898507086be172e6  LICENSES.md
2535518c87309e4bf34cc71fee14a4cd59ecfe26f35a416bcd85e9773e982379  PROVENANCE.md
456ae94bac7afbb55da4849c4e4e6b63409305831a0e544fa12b6c59ab466e72  README.md
41e35bd2962c759ba97fe0d7177628d2c8ca62dab470122ba57aeadb259861a5  RESEARCH_LOG.md
b3fadd519c53107e55712af67ea7bc53dade4280a1861b4429e6a7018ec803f2  SOURCE_CONVENTION_CROSSCHECK.md
cadc75e02afb669b3c8856ec74c7ef1a997618831da82fbd8d8d6d60fe252bbf  certificate_k2p_continuous_time.json
4a556388e82bb00d5d3087893283a56919e5ac9b23ab060cc1b870d55918b1db  certificate_k2p_simple.json
11dfdb651350ae0d835ef7115d9446824cf18a5c45b77fa4d53511bbf6778c68  certificate_k3p.json
7f1ecd0e70504736146eb8f2d4ebfb43980fd1feef50cf39bbe7e751ad5afa8f  combined-paper-clarified.pdf
e4876619a27cdd7e91e051c89b0827da418d6d201a40400c2bc3c31e2f1f9a9a  combined-paper-clarified.tex
1d2d13053765a9d4ad86a29fba4951d3462a6580a4e53a2adaa349678d5591a8  continuous_time_certificate_k3p.json
d7aa8498e044e22681ae84565009b045329700d1d39ea4f4c927e6c693549519  figures/theta_network.tikz
9dde1d59a5afad41889b56e449c6d66e7646ffb996df6ca03a5043c5c7103e4e  jacobian_certificate_k3p.json
14855c3cddf1aea47f2d8e014ab9ea2618a8f3fa76cf08a4ebb468dcf68f1c57  k2p_displayed_tree_clarification.pdf
10cfd554bf9c1ee7cbfc7ffb15e477eeac682c98faff30563d488e46b7586be1  k2p_displayed_tree_clarification.tex
86ad927468ae3def06f837e565179b8aae968ef2bbaeff6ebed95a93373787ee  manifest.sha256
f70dd60666bb4e306709f9f96fc9c4e758411c2d90ec00628326430b93883173  references.bib
7262bd62f59c53923761cb2f0c113b66ff0d81c6e08a52ae798c5f0ec6ecd64f  src/build_pdfs.sh
c64095c38149995e57e7aefe0bffa8df48d2ea858b076e92560f3bb201665d37  src/generate_k2p_simple_certificate.py
6979ca20bee1c2bb35b377966e63e1fced6d61569c459fa5aa1f7cb1bc9a3ae0  src/test_json_schema_mutations.py
8213a90e100af0c1b5c33ab504f013d94a32f49e1985e58b4d0c8cba3897f063  src/test_k2p_semantic_mutations.py
f554be0202cb7946d4409a609f5592907fe5f2b72b486de35eac4c9c91238e1b  src/test_k3p_semantic_mutations.py
760abf81613f5dedee9620974ce3ccacfb3edc5ceffeb86a459c1720a5865dec  src/verify_k2p_extended.py
34cf2e7b69b105837730ed33398c0736f0f6972ca63ea378bd399c5dfa45a1a7  src/verify_k2p_four_leaf_graft.py
6e94d08ec84c4c5ca59155f1d6dcf15bfb9705b35b334ba652b730dd6566e224  src/verify_k2p_rank_family.py
d1d64be9102bbd8c7e40824dfa20a324ec6fc02362bc72b8a79e82f051dd9b34  src/verify_k3p.py
62a874dcc6d65f3e4589faf6e3b02643caa8093ef455c54ea60da51388d12611  src/verify_source_conventions.py
8f0c4267a6ce4a176ab301ae5f5b1a628e18ce63fa504c3c89a38be46bcd7bb3  strict_json.py
1e924a8ac26a04a6d525d9f53f100af21aad9c0ab161f3a92ad89b4f0030d98b  submission/build_release.sh
4864396b878ecdd6cbfb0b92df960fb9344e015866eaaa61ee2979cfc66e4637  technical-summary-clarified.pdf
d8bdf30571ffed6d999dab793d09047b2cd6c1bce79615b769f4193b8fb5ad47  technical-summary-clarified.tex
39ecb654c43887d61ff094478eb787187bb63c9eb0d832c14b977b198c358a96  verification_report_complete.txt
2dc64c81ee6444e9d26888e4af45a3f836c94515888fcd00fe775c70fbb683a5  verification_report_displayed_trees.txt
5275dab94cb341721ecc39a2c740fd3396adb91268beb1a5e5b64937bb636f87  verification_report_four_leaf_graft.txt
11651243e83da30f433be8b95448991752609f5a273405fcd743dbaccae2d41d  verification_report_json_schema.txt
0b6fd0efc37fcaff0bf563b77f86a46b525620bdb5cf0b0c9172330635854c11  verification_report_simple.txt
7c7a3dafecf0f359303533a744700b15164870e361df2d226e672dcd8f6fe5e1  verification_report_source_conventions.txt
006b0114ec3ecb7ed64d0da294d517bc7b3d8209ebd743e4116f96f084a07200  verify.py
530f8ebe4b31b069281c9f07f1ce825bfea0a9e678f5190b39c726ec2252e613  verify_k2p_displayed_trees.py
433013fcbbbd9969f5e7a521c9b257c17cb02808d49b4e6fbda8bca030c98c6c  verify_k2p_simple.py
